2026-04-10T18:23:32+02:00 BioCMD Editorial https://biocmd.com BioCMD Editorial https://biocmd.com/biocmd.html 2026-04-10T18:23:32+02:00

Discover the essential CLI tools, scripts, and automation workflows for bioinformatics, genomics, and computational biology.

**BioCMD covers:**
**Computational Biology** Command-line tools for NGS analysis, genome assembly, variant calling
**Bioinformatics Workflows** Nextflow, Snakemake, and production pipelines for biological data
**Data Processing** FASTQ processing, BAM/SAM manipulation, VCF analysis, BED/BigWig operations
**Visualization** Genome browsers, track hubs, publication-ready plots from the terminal
**Automation** Reproducible research pipelines, containerized bio-tools, cluster job submission

**Featured tools:**
samtools • bcftools • bedtools • bowtie2 • HISAT2 • STAR • GATK • 
Nextflow • Snakemake • MultiQC • FastQC • BBMap • Prokka • QUAST

**Recent articles:**
"10 Essential Bioinformatics Commands Every Biologist Needs"
"Build Your First Nextflow Pipeline: From FASTQ to Annotated Genome"
"Master SAM/BAM Manipulation with samtools (Cheatsheet)"
"Automate Genome Assembly with Prokka + QUAST"
"Snakemake vs Nextflow: Which Workflow Manager for Bioinformatics?"

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